| NCBI field | NCBI description | NWSS field |
| sample_name | Sample Name is a name that you choose for the sample. It can have any format, but we suggest that you make it concise, unique and consistent within your lab, and as informative as possible. Every Sample Name from a single Submitter must be unique. | |
| sample_title | Title of the sample. | |
| bioproject_accession | The accession number of the BioProject(s) to which the BioSample belongs. If the BioSample belongs to more than one BioProject, enter multiple bioproject_accession columns. A valid BioProject accession has prefix PRJN, PRJE or PRJD, e.g., PRJNA12345. | |
| organism | The most descriptive organism name for this sample (to the species, if possible). It is OK to submit an organism name that is not in our database. In the case of a new species, provide the desired organism name, and our taxonomists may assign a provisional taxID. In the case of unidentified species, choose the appropriate Genus and include 'sp.', e.g., "Escherichia sp.". When sequencing a genome from a non-metagenomic source, include a strain or isolate name too, e.g., "Pseudomonas sp. UK4". For more information about providing a valid organism, including new species, metagenomes (microbiomes) and metagenome-assembled genomes, see https://www.ncbi.nlm.nih.gov/biosample/docs/organism/. | |
| collection_date | The date on which the sample was collected; date/time ranges are supported by providing two dates from among the supported value formats, delimited by a forward-slash character; collection times are supported by adding "T", then the hour and minute after the date, and must be in Coordinated Universal Time (UTC), otherwise known as "Zulu Time" (Z); supported formats include "DD-Mmm-YYYY", "Mmm-YYYY", "YYYY" or ISO 8601 standard "YYYY-mm-dd", "YYYY-mm", "YYYY-mm-ddThh:mm:ss"; e.g., 30-Oct-1990, Oct-1990, 1990, 1990-10-30, 1990-10, 21-Oct-1952/15-Feb-1953, 2015-10-11T17:53:03Z; valid non-ISO dates will be automatically transformed to ISO format | sample_collect_date |
| geo_loc_name | Geographical origin of the sample; use the appropriate name from this list http://www.insdc.org/documents/country-qualifier-vocabulary. Use a colon to separate the country or ocean from more detailed information about the location, eg "Canada: Vancouver" or "Germany: halfway down Zugspitze, Alps" | wwtp_jurisdiction; county_names; zipcode |
| isolation_source | Describes the physical, environmental and/or local geographical source of the biological sample from which the sample was derived. | sample_location |
| ww_population | Number of persons contributing wastewater to this sample collection site; if unknown, estimate to the nearest order of magnitude, e.g., 10000. If no estimate is available, input NA. | population_served |
| ww_sample_duration | Duration of composite sample collected, in units of hours, e.g., 24. Specify integer values. If the sample is not a composite sample, use 0. | composite_freq |
| ww_sample_matrix | The wastewater matrix that was sampled | sample_matrix |
| ww_sample_type | Type of wastewater sample collected | sample_type |
| ww_surv_target_1 | Taxonomic name of the surveillance target. For the COVID-19 response, use 'SARS-CoV-2'. | pcr_target |
| ww_surv_target_1_known_present | Is genetic material of the surveillance target(s) known to the submitter to be present in this wastewater sample? Presence defined as microbiological evidence of the target organism in the wastewater sample, such as genetic- or culture-based detection. | |
| collected_by | Name of persons or institute who collected the sample | |
| purpose_of_ww_sampling | The reason the sample was collected | |
| purpose_of_ww_sequencing | The reason the sample was sequenced, e.g., identification of mutations within a specific region, presence of clinically known mutations, or diversity of mutations across entire genome | |
| sequenced_by | The name of the agency that generated the sequence, e.g., Centers for Disease Control and Prevention | |
| ww_endog_control_1 | The name of an organism, gene, or compound used as an endogenous wastewater control, e.g., pepper mild mottle virus | hum_frac_target_mic; hum_frac_target_chem; other_norm_name |
| ww_endog_control_1_conc | The concentration of the endogenous control specified in 'ww_endog_control_1' on a per wastewater unit basis, e.g., 700000000 | hum_frac_mic_conc; hum_frac_chem_conc; other_norm_conc |
| ww_endog_control_1_protocol | The protocol used to quantify 'ww_endog_control_1'. Specify a reference, website, or brief description. | hum_frac_target_mic_ref; hum_frac_target_chem_ref; other_norm_ref |
| ww_endog_control_1_units | The units of the value specified in 'ww_endog_control_1_conc', e.g., copies/L wastewater | hum_frac_mic_unit; hum_frac_chem_unit; other_norm_unit |
| ww_endog_control_2 | The name of an organism, gene, or compound used as an endogenous wastewater control, e.g., crassphage | hum_frac_target_mic; hum_frac_target_chem; other_norm_name |
| ww_endog_control_2_conc | The concentration of the endogenous control specified in 'ww_endog_control_2' on a per wastewater unit basis, e.g., 140000000 | hum_frac_mic_conc; hum_frac_chem_conc; other_norm_conc |
| ww_endog_control_2_protocol | The protocol used to quantify 'ww_endog_control_2'. Specify a reference, website, or brief description. | hum_frac_target_mic_ref; hum_frac_target_chem_ref; other_norm_ref |
| ww_endog_control_2_units | The units of the value specified in 'ww_endog_control_2_conc', e.g., copies/L wastewater | hum_frac_mic_unit; hum_frac_chem_unit; other_norm_unit |
| ww_flow | Daily volumetric flow through collection site, in units of liters per day, e.g., 110000000. | flow_rate |
| ww_industrial_effluent_percent | Percentage of industrial effluents received by wastewater treatment plant, e.g., 10 | industrial_input |
| ww_ph | pH measurement of the sample, or liquid portion of sample, or aqueous phase of the fluid, e.g., 7.2 | ph |
| ww_population_source | Source of value specified in 'ww_population', e.g., wastewater utility billing records, population of jurisdiction encompassing the wastewater service area, census blocks clipped to wastewater service area polygon | |
| ww_pre_treatment | Describe any process of pre-treatment that removes materials that can be easily collected from the raw wastewater, e.g., flow equilibration basin promotes settling of some solids | if pretreatment == 'yes' then pretreatment_specify |
| ww_primary_sludge_retention_time | The time primary sludge remains in tank, in hours, e.g., 4. | |
| ww_processing_protocol | The protocol used to process the wastewater sample. Processing includes laboratory procedures prior to and including nucleic acid purification (e.g., pasteurization, concentration, extraction, etc). Specify a reference, website, or brief description. | solids_separation; concentration_method; extraction_method; pasteurized |
| ww_sample_salinity | Salinity is the total concentration of all dissolved salts in a liquid or solid (in the form of an extract obtained by centrifugation) sample or derived from the conductivity measurement (practical salinity) in milligrams per liter, e.g., 100. | derived from conductivity |
| ww_sample_site | The type of site where the wastewater sample was collected Allowed values: correctional facility, long-term care facility, hospital, child day care, school, college or university, social services shelter, other residential building, ship, airplane, septic tank, other holding tank, wastewater treatment plant, wastewater lagoon, sewer pipeline, other, restricted access, not applicable, not collected, not provided, missing |
institution_type |
| ww_surv_jurisdiction | A jurisdiction identifer that can be used to support linking the sample to a public health surveillance system, e.g., va | wwtp_jurisdiction |
| ww_surv_system_sample_id | The sample ID used for submission to a public health surveillance system (e.g., CDC's National Wastewater Surveillance System), e.g., s123456 | sample_id |
| ww_surv_target_1_conc | The concentration of the wastewater surveillance target specified in 'ww_surv_target_1' on a per wastewater unit basis, e.g., 200000 | pcr_target_avg_conc |
| ww_surv_target_1_conc_unit | The units of the value specified in 'ww_surv_target_1_conc', e.g., copies/L wastewater | pcr_target_units |
| ww_surv_target_1_extract | Measured amount of surveillance target in the nucleic acid extract that was sequenced; on a per extract unit basis, rather than on a per wastewater sample unit basis, e.g., 100000 | |
| ww_surv_target_1_extract_unit | The units of the value specified in 'ww_surv_target_1_extract', e.g., copies/microliter extract | |
| ww_surv_target_1_gene | The name of the gene quantified for the the surveillance target specified in 'ww_surv_target_1', e.g., N gene | pcr_gene_target |
| ww_surv_target_1_protocol | The protocol used to quantify 'ww_surv_target_1'. Specify a reference, website, or brief description. | quant_stan_type; stan_ref; inhibition_method; num_no_target_control; pcr_gene_target_ref; pcr_type |
| ww_surv_target_2 | Taxonomic name of the surveillance target, eg, Norovirus | pcr_target |
| ww_surv_target_2_conc | The concentration of the wastewater surveillance target specified in 'ww_surv_target_2' on a per wastewater unit basis, e.g., 24000 | pcr_target_avg_conc |
| ww_surv_target_2_conc_unit | The units of the value specified in 'ww_surv_target_2_conc', e.g., copies/L wastewater | pcr_target_units |
| ww_surv_target_2_extract | Measured amount of surveillance target in the nucleic acid extract that was sequenced; on a per extract unit basis, rather than on a per wastewater sample unit basis, e.g., 12000 | |
| ww_surv_target_2_extract_unit | The units of the value specified in 'ww_surv_target_2_extract', e.g., copies/microliter extract | |
| ww_surv_target_2_gene | The name of the gene quantified for the the surveillance target specified in 'ww_surv_target_2', e.g., ORF1-ORF2 junction | pcr_gene_target |
| ww_surv_target_2_known_present | Is genetic material of the surveillance target(s) known to the submitter to be present in this wastewater sample? Presence defined as microbiological evidence of the target organism in the wastewater sample, such as genetic- or culture-based detection. | |
| ww_surv_target_2_protocol | The protocol used to quantify 'ww_surv_target_2'. Specify a reference, website, or brief description. | quant_stan_type; stan_ref; inhibition_method; num_no_target_control; pcr_gene_target_ref; pcr_type |
| ww_temperature | Temperature of the wastewater sample at the time of sampling in Celsius, e.g., 25. | collection_water_temp |
| ww_total_suspended_solids | Total concentration of solids in raw wastewater influent sample including a wide variety of material, such as silt, decaying plant and animal matter in milligrams per liter, e.g., 500. | tss |
| description | Description of the sample. |
| NCBI field | NCBI description | NCBI required | Notes |
| sample_name | Sample Name is a name that you choose for the sample. It can have any format, but we suggest that you make it concise, unique and consistent within your lab, and as informative as possible. Every Sample Name from a single Submitter must be unique. | Yes | If information is unavailable for any mandatory field, please enter 'not collected', 'not applicable' or 'missing' as appropriate. |
| sample_title | Title of the sample. | No | |
| bioproject_accession | The accession number of the BioProject(s) to which the BioSample belongs. If the BioSample belongs to more than one BioProject, enter multiple bioproject_accession columns. A valid BioProject accession has prefix PRJN, PRJE or PRJD, e.g., PRJNA12345. | No | |
| organism | The most descriptive organism name for this sample (to the species, if possible). It is OK to submit an organism name that is not in our database. In the case of a new species, provide the desired organism name, and our taxonomists may assign a provisional taxID. In the case of unidentified species, choose the appropriate Genus and include 'sp.', e.g., "Escherichia sp.". When sequencing a genome from a non-metagenomic source, include a strain or isolate name too, e.g., "Pseudomonas sp. UK4". For more information about providing a valid organism, including new species, metagenomes (microbiomes) and metagenome-assembled genomes, see https://www.ncbi.nlm.nih.gov/biosample/docs/organism/. | Yes | If information is unavailable for any mandatory field, please enter 'not collected', 'not applicable' or 'missing' as appropriate. |
| collection_date | The date on which the sample was collected; date/time ranges are supported by providing two dates from among the supported value formats, delimited by a forward-slash character; collection times are supported by adding "T", then the hour and minute after the date, and must be in Coordinated Universal Time (UTC), otherwise known as "Zulu Time" (Z); supported formats include "DD-Mmm-YYYY", "Mmm-YYYY", "YYYY" or ISO 8601 standard "YYYY-mm-dd", "YYYY-mm", "YYYY-mm-ddThh:mm:ss"; e.g., 30-Oct-1990, Oct-1990, 1990, 1990-10-30, 1990-10, 21-Oct-1952/15-Feb-1953, 2015-10-11T17:53:03Z; valid non-ISO dates will be automatically transformed to ISO format | Yes | If information is unavailable for any mandatory field, please enter 'not collected', 'not applicable' or 'missing' as appropriate. |
| geo_loc_name | Geographical origin of the sample; use the appropriate name from this list http://www.insdc.org/documents/country-qualifier-vocabulary. Use a colon to separate the country or ocean from more detailed information about the location, eg "Canada: Vancouver" or "Germany: halfway down Zugspitze, Alps" | Yes | If information is unavailable for any mandatory field, please enter 'not collected', 'not applicable' or 'missing' as appropriate. |
| isolation_source | Describes the physical, environmental and/or local geographical source of the biological sample from which the sample was derived. | Yes | If information is unavailable for any mandatory field, please enter 'not collected', 'not applicable' or 'missing' as appropriate. |
| ww_population | Number of persons contributing wastewater to this sample collection site; if unknown, estimate to the nearest order of magnitude, e.g., 10000. If no estimate is available, input NA. | Yes | If information is unavailable for any mandatory field, please enter 'not collected', 'not applicable' or 'missing' as appropriate. |
| ww_sample_duration | Duration of composite sample collected, in units of hours, e.g., 24. Specify integer values. If the sample is not a composite sample, use 0. | Yes | If information is unavailable for any mandatory field, please enter 'not collected', 'not applicable' or 'missing' as appropriate. |
| ww_sample_matrix | The wastewater matrix that was sampled | Yes | If information is unavailable for any mandatory field, please enter 'not collected', 'not applicable' or 'missing' as appropriate. |
| ww_sample_type | Type of wastewater sample collected | Yes | If information is unavailable for any mandatory field, please enter 'not collected', 'not applicable' or 'missing' as appropriate. |
| ww_surv_target_1 | Taxonomic name of the surveillance target. For the COVID-19 response, use 'SARS-CoV-2'. | Yes | If information is unavailable for any mandatory field, please enter 'not collected', 'not applicable' or 'missing' as appropriate. |
| ww_surv_target_1_known_present | Is genetic material of the surveillance target(s) known to the submitter to be present in this wastewater sample? Presence defined as microbiological evidence of the target organism in the wastewater sample, such as genetic- or culture-based detection. | Yes | If information is unavailable for any mandatory field, please enter 'not collected', 'not applicable' or 'missing' as appropriate. |
| collected_by | Name of persons or institute who collected the sample | No | |
| purpose_of_ww_sampling | The reason the sample was collected | No | |
| purpose_of_ww_sequencing | The reason the sample was sequenced, e.g., identification of mutations within a specific region, presence of clinically known mutations, or diversity of mutations across entire genome | No | |
| sequenced_by | The name of the agency that generated the sequence, e.g., Centers for Disease Control and Prevention | No | |
| ww_endog_control_1 | The name of an organism, gene, or compound used as an endogenous wastewater control, e.g., pepper mild mottle virus | No | |
| ww_endog_control_1_conc | The concentration of the endogenous control specified in 'ww_endog_control_1' on a per wastewater unit basis, e.g., 700000000 | No | |
| ww_endog_control_1_protocol | The protocol used to quantify 'ww_endog_control_1'. Specify a reference, website, or brief description. | No | |
| ww_endog_control_1_units | The units of the value specified in 'ww_endog_control_1_conc', e.g., copies/L wastewater | No | |
| ww_endog_control_2 | The name of an organism, gene, or compound used as an endogenous wastewater control, e.g., crassphage | No | |
| ww_endog_control_2_conc | The concentration of the endogenous control specified in 'ww_endog_control_2' on a per wastewater unit basis, e.g., 140000000 | No | |
| ww_endog_control_2_protocol | The protocol used to quantify 'ww_endog_control_2'. Specify a reference, website, or brief description. | No | |
| ww_endog_control_2_units | The units of the value specified in 'ww_endog_control_2_conc', e.g., copies/L wastewater | No | |
| ww_flow | Daily volumetric flow through collection site, in units of liters per day, e.g., 110000000. | No | |
| ww_industrial_effluent_percent | Percentage of industrial effluents received by wastewater treatment plant, e.g., 10 | No | |
| ww_ph | pH measurement of the sample, or liquid portion of sample, or aqueous phase of the fluid, e.g., 7.2 | No | |
| ww_population_source | Source of value specified in 'ww_population', e.g., wastewater utility billing records, population of jurisdiction encompassing the wastewater service area, census blocks clipped to wastewater service area polygon | No | |
| ww_pre_treatment | Describe any process of pre-treatment that removes materials that can be easily collected from the raw wastewater, e.g., flow equilibration basin promotes settling of some solids | No | |
| ww_primary_sludge_retention_time | The time primary sludge remains in tank, in hours, e.g., 4. | No | |
| ww_processing_protocol | The protocol used to process the wastewater sample. Processing includes laboratory procedures prior to and including nucleic acid purification (e.g., pasteurization, concentration, extraction, etc). Specify a reference, website, or brief description. | No | |
| ww_sample_salinity | Salinity is the total concentration of all dissolved salts in a liquid or solid (in the form of an extract obtained by centrifugation) sample or derived from the conductivity measurement (practical salinity) in milligrams per liter, e.g., 100. | No | |
| ww_sample_site | The type of site where the wastewater sample was collected Allowed values: correctional facility, long-term care facility, hospital, child day care, school, college or university, social services shelter, other residential building, ship, airplane, septic tank, other holding tank, wastewater treatment plant, wastewater lagoon, sewer pipeline, other, restricted access, not applicable, not collected, not provided, missing |
No | |
| ww_surv_jurisdiction | A jurisdiction identifer that can be used to support linking the sample to a public health surveillance system, e.g., va | No | |
| ww_surv_system_sample_id | The sample ID used for submission to a public health surveillance system (e.g., CDC's National Wastewater Surveillance System), e.g., s123456 | No | |
| ww_surv_target_1_conc | The concentration of the wastewater surveillance target specified in 'ww_surv_target_1' on a per wastewater unit basis, e.g., 200000 | No | |
| ww_surv_target_1_conc_unit | The units of the value specified in 'ww_surv_target_1_conc', e.g., copies/L wastewater | No | |
| ww_surv_target_1_extract | Measured amount of surveillance target in the nucleic acid extract that was sequenced; on a per extract unit basis, rather than on a per wastewater sample unit basis, e.g., 100000 | No | |
| ww_surv_target_1_extract_unit | The units of the value specified in 'ww_surv_target_1_extract', e.g., copies/microliter extract | No | |
| ww_surv_target_1_gene | The name of the gene quantified for the the surveillance target specified in 'ww_surv_target_1', e.g., N gene | No | |
| ww_surv_target_1_protocol | The protocol used to quantify 'ww_surv_target_1'. Specify a reference, website, or brief description. | No | |
| ww_surv_target_2 | Taxonomic name of the surveillance target, eg, Norovirus | No | |
| ww_surv_target_2_conc | The concentration of the wastewater surveillance target specified in 'ww_surv_target_2' on a per wastewater unit basis, e.g., 24000 | No | |
| ww_surv_target_2_conc_unit | The units of the value specified in 'ww_surv_target_2_conc', e.g., copies/L wastewater | No | |
| ww_surv_target_2_extract | Measured amount of surveillance target in the nucleic acid extract that was sequenced; on a per extract unit basis, rather than on a per wastewater sample unit basis, e.g., 12000 | No | |
| ww_surv_target_2_extract_unit | The units of the value specified in 'ww_surv_target_2_extract', e.g., copies/microliter extract | No | |
| ww_surv_target_2_gene | The name of the gene quantified for the the surveillance target specified in 'ww_surv_target_2', e.g., ORF1-ORF2 junction | No | |
| ww_surv_target_2_known_present | Is genetic material of the surveillance target(s) known to the submitter to be present in this wastewater sample? Presence defined as microbiological evidence of the target organism in the wastewater sample, such as genetic- or culture-based detection. | No | |
| ww_surv_target_2_protocol | The protocol used to quantify 'ww_surv_target_2'. Specify a reference, website, or brief description. | No | |
| ww_temperature | Temperature of the wastewater sample at the time of sampling in Celsius, e.g., 25. | No | |
| ww_total_suspended_solids | Total concentration of solids in raw wastewater influent sample including a wide variety of material, such as silt, decaying plant and animal matter in milligrams per liter, e.g., 500. | No | |
| description | Description of the sample. | No |
| NWSS field | NWSS description | NWSS required | Notes |
| reporting_jurisdiction | The CDC Epidemiology and Laboratory Capacity (ELC) jurisdiction, most frequently a state, reporting these data (2-letter abbreviation) | Yes | |
| county_names | 5-digit numeric FIPS codes of all counties and county equivalents served by this sampling site (i.e., served by this wastewater treatment plant or, if 'sample_location' is "upstream", then by this upstream location). Note that most jurisdictions are covered by counties, but some are covered by county equivalents, such as independent cities, parishes, or census areas. | Yes | |
| other_jurisdiction | This field has been deprecated. Specify FIPS codes for counties and county equivalents in 'county_names'. | No | |
| zipcode | ZIP code in which this sampling site is located | Yes | |
| population_served | Estimated number of persons served by this sampling site (i.e., served by this wastewater treatment plant or, if 'sample_location' is "upstream", then by this upstream location) | Yes | |
| sewage_travel_time | What is the approximate sewage travel time, on average, from sewage source to this sampling site (i.e., this wastewater treatment plant or, if 'sample_location' is "upstream", then this upstream location)? This should be specified as a duration in hours, not a time of day. | No | |
| sample_location | Sample collection location in the wastewater system, whether at a wastewater treatment plant (or other community level treatment infrastructure such as community-scale septic) or upstream in the wastewater system | Yes | If 'sample_location' is "upstream", specify in 'sample_location_specify' |
| sample_location_specify | If 'sample_location' is "upstream", specify the collection location in the wastewater system; an arbitrary name may be used if you do not wish to disclose the real name. | Yes | If sample_location is "upstream", then this must have a non-empty value |
| institution_type | If this sample represents wastewater from a single institution, facility, or building, specify the institution type; otherwise, specify "not institution specific" | Yes | |
| epaid | NPDES permit number for the wastewater treatment plant specified in 'wwtp_name' | No | |
| wwtp_name | The name of the Wastewater Treatment Plant (WWTP) to which this wastewater flows. If this wastewater does not flow to a WWTP, specify an identifiable name for the septic or other treatment system to which this wastewater flows. An arbitrary name may be used if you do not wish to disclose the real name. | Yes | |
| wwtp_jurisdiction | State, DC, US territory, or Freely Associated State jurisdiction name (2-letter abbreviation) in which the wastewater treatment plant provided in 'wwtp_name' is located | Yes | |
| capacity_mgd | Wastewater treatment plant design capacity. This should be the capacity for which the plant is permitted. | Yes | |
| industrial_input | Approximate average percentage of wastewater from industrial sources that is received by the wastewater treatment plant specified in 'wwtp_name' | No | |
| stormwater_input | Does the wastewater treatment plant specified in 'wwtp_name' treat water from a combined sewer system (i.e., a sewer system that collects both sewage and stormwater)? | No | |
| influent_equilibrated | Is influent to the wastewater treatment plant specified in 'wwtp_name' ever stored prior to treatment to equilibrate or modulate the influent flow rate? | No | |
| sample_type | Type of sample collected, whether grab or composite. If composite, also provide the duration of sampling and type of composite, as listed in the Value Set (e.g., "24-hr flow-weighted composite"). A grab sample is defined as an individual sample collected without compositing or adding other samples, regardless of whether the sample matrix is liquid wastewater or sludge. | Yes | |
| composite_freq | Frequency of sub-sample collection (for composite samples only): for flow-weighted, the number of sub-samples collected per million gallons of flow; for time-weighted, the number of sub-samples per hour. Flow-weighted example: a value of 5 would indicate 5 sub-samples per million gallons, or 1 sub-sample per 200,000 gallons | No | |
| sample_matrix | Wastewater matrix from which the sample was collected | Yes | |
| collection_storage_time | Duration of time the sample was stored after collection and prior to reaching the lab | No | |
| collection_storage_temp | Temperature at which the sample was stored after collection and prior to reaching the lab | No | |
| pretreatment | Was the sample treated with any chemicals prior to reaching the lab? These could include chemicals, such as stabilizers, added to the sample or chemicals, such as chlorine, added to the wastewater treatment train upstream of the sample collection point. Pasteurization should be specified in the 'pasteurized' field. | No | if 'pretreatment' is "yes", then specify in 'pretreatment_specify' |
| pretreatment_specify | If 'pretreatment' is "yes", then specify the chemicals used | No | if 'pretreatment' is "yes", then specify in 'pretreatment_specify' |
| solids_separation | Process used to separate solid and liquid phases of the sample, either prior to or in the absence of the concentration method specified in 'concentration_method' | No | |
| concentration_method | Method used to concentrate the sample prior to analysis of the concentrate | Yes | |
| extraction_method | Method used for nucleic acid extraction from the sample | Yes | |
| pre_conc_storage_time | The approximate average duration of time between when samples reach the lab and when they are concentrated (if concentrated) | No | |
| pre_conc_storage_temp | The storage temperature of samples after reaching the lab and prior to concentration (if concentrated) | No | |
| pre_ext_storage_time | The approximate average duration of time between when samples are concentrated (if concentrated) and when they are extracted | No | |
| pre_ext_storage_temp | The storage temperature of samples after concentration (if concentrated) and prior to extraction | No | |
| tot_conc_vol | Total volume of sample concentrated (if concentrated); this total volume is not necessarily assayed and is not necessarily equal to the value specified in 'equiv_sewage_amt' | No | |
| ext_blank | Are extraction blanks included in the extraction process? | No | |
| rec_eff_target_name | Name of the recovery efficiency control target that is spiked in | Yes | If 'rec_eff_percent' is equal to a value other than "-1", then this must have a non-empty value |
| rec_eff_spike_matrix | Matrix into which the recovery efficiency control target is spiked | Yes | If 'rec_eff_target_name' has a non-empty value, then this must have a non-empty value |
| rec_eff_spike_conc | Spike concentration, on average, of the recovery control on a per sample volume basis | Yes | If 'rec_eff_target_name' has a non-empty value, then this must have a non-empty value |
| pasteurized | Was the sample pasteurized? | No | |
| pcr_target | The target of the PCR quantification | Yes | |
| pcr_gene_target | The PCR gene used to quantify PCR target | Yes | The value selected for pcr_gene_target should align with the value selected for pcr_target |
| pcr_gene_target_ref | A publication, website, or brief description of the PCR gene target used | Yes | |
| pcr_type | The type of PCR used to quantify the PCR target | Yes | |
| lod_ref | A publication, website, or brief description of the method used to calculate the limit of detection | Yes | |
| hum_frac_target_mic | Name of microbial target used to estimate human fecal content | No | If 'hum_frac_mic_conc' has a non-empty value, then this must have a non-empty value |
| hum_frac_target_mic_ref | A publication, website, or brief description of the microbial target specified in 'hum_frac_target_mic' | No | If 'hum_frac_mic_conc' has a non-empty value, then this must have a non-empty value |
| hum_frac_target_chem | Name of chemical compound used to estimate human fecal content | No | If 'hum_frac_chem_conc' has a non-empty value, then this must have a non-empty value |
| hum_frac_target_chem_ref | A publication, website, or brief description of the chemical compound specified in 'hum_frac_target_chem' | No | If 'hum_frac_chem_conc' has a non-empty value, then this must have a non-empty value |
| other_norm_name | Name of a target or compound not specified in 'hum_frac_target_mic' or 'hum_frac_target_chem' used to estimate human fecal content | No | If 'other_norm_conc' has a non-empty value, then this must have a non-empty value |
| other_norm_ref | A publication, website, or brief description of the target or compound specified in 'other_norm_name' | No | If 'other_norm_conc' has a non-empty value, then this must have a non-empty value |
| quant_stan_type | The type of nucleic acid used as a standard for the PCR target quantification | Yes | |
| stan_ref | A publication, website, or brief description of the quantitative standard material used | Yes | |
| inhibition_method | A publication, website, or brief description of the method used to evaluate molecular inhibition | Yes | |
| num_no_target_control | Number of no-template controls (NTC) per instrument run | Yes | |
| sample_collect_date | The date of sample collection; for composite samples, specify the date on which sample collection began | Yes | |
| sample_collect_time | The local time of sample collection; for composite samples, specify the time at which sample collection began | Yes | |
| time_zone | Current local time zone corresponding to the time specified in 'sample_collect_time', represented as a UTC time offset (e.g., UTC-06:00) | No | |
| flow_rate | Wastewater volumetric flow rate at the sample collection location over the 24-hr period during which the sample was collected. If only an instantaneous flow measurement is available, it may be reported in units of million gallons per day. | Yes | If 'sars_cov2_units' is on a per volume wastewater basis (e.g., copies/l wastewater), then this must have a non-empty value (i.e., measurements of wastewater solids are permitted empty values for 'flow_rate') |
| ph | pH of wastewater sample (if sludge, pH of influent at time of collection) | No | |
| conductivity | Specific conductivity of wastewater sample (if sludge, conductivity of influent at time of collection) | No | |
| tss | Total suspended solids of raw (or, if unavailable, post-grit removal) wastewater | No | |
| collection_water_temp | Sample temperature at time of collection | No | |
| equiv_sewage_amt | Equivalent unconcentrated volume of wastewater or mass of sludge in PCR reaction | No | |
| sample_id | An ID assigned to a wastewater sample. It must be unique for this NWSS reporting jurisdiction. Wastewater samples that are split and measured by different labs should have the same sample ID but different lab IDs. Wastewater samples for which multiple PCR targets are measured should also have the same sample ID. Note: do not include PII in this field. | Yes | |
| lab_id | An ID assigned to a testing lab. It must be unique across labs used for this NWSS reporting jurisdiction's testing. If the same lab is used across multiple NWSS reporting jurisdictions, each NWSS reporting jurisdiction may assign that lab a different lab ID. Note: including PII in this field is discouraged. | Yes | |
| qc_ignore | Should the DCIPHER QC report ignore this sample? The purpose of this field is to allow for removal of samples from the QC report so that samples with unresolvable QC issues do not clutter the report. This field only affects whether samples are shown in the QC report, not how they are otherwise processed or analyzed. If the value is "yes", then this sample will be excluded from the QC report. If the value is "no" or [empty], then this sample will be included in the QC report for up to 90 days. Samples will only be included in the QC report for up to 90 days, regardless of the value specified in ‘qc_ignore’. | No | |
| dashboard_ignore | Should the DCIPHER dashboard ignore this sample? If the value is "yes", then this sample will be excluded from the dashboard. If the value is "no" or [empty], then this sample will be included in the dashboard. In addition to excluding the sample from the DCIPHER dashboard, this field will also prevent the sample from public data release. |
No | |
| analysis_ignore | Should DCIPHER data analysis ignore this sample? If the value is "yes", then this sample will be excluded from DCIPHER data analysis, which will also cause it to be excluded from the dashboard. If the value is "no" or [empty], then this sample will be included in DCIPHER data analysis. | No | |
| test_result_date | The date on which this PCR target measurement was made | Yes | |
| pcr_target_units | Units of PCR target sample concentration | Yes | The units should relate to the PCR target indicated in pcr_target |
| pcr_target_avg_conc | Concentration of the PCR target back-calculated to unconcentrated sample basis; enter "0" if no amplification occurred, using the definition of amplification described in 'ntc_amplify'; otherwise, enter the estimated concentration; do not adjust for matrix recovery efficiency | Yes | The concentration should relate to the PCR target indicated in pcr_target |
| pcr_target_std_error | Standard error (SE) of the PCR target in wastewater sample, or best estimate that is consistently available. If sample replicates are always performed, use SE of sample replicates; else, if processing replicates are always performed, use SE of processing replicates; else, if qPCR is performed, use SE of PCR replicates; else, if digital PCR is performed, use error from multiple replicates if available, and Poisson error if not | No | The standard error should relate to the PCR target indicated in pcr_target |
| pcr_target_cl_95_lo | Lower bound of 95% confidence interval of the PCR target in wastewater sample, or best estimate that is consistently available. Follow the same hierarchy as described for standard error. (Note: 'cl' stands for confidence limit) | No | The lower bound of the 95% confidence interval should relate to the PCR target indicated in pcr_target |
| pcr_target_cl_95_up | Upper bound of 95% confidence interval of the PCR target in wastewater sample, or best estimate that is consistently available. Follow the same hierarchy as described for standard error. (Note: 'cl' stands for confidence limit) | No | The upper bound of the 95% confidence interval should relate to the PCR target indicated in pcr_target |
| pcr_target_below_lod | Was the concentration of the PCR target below the limit of detection? | No | Whether the concentration was below the LOD should be based on the LOD of the PCR target indicated in lod_sewage |
| lod_sewage | PCR target limit of detection back-calculated to unconcentrated sample basis | Yes | The LOD should relate to the PCR target indicated in pcr_target |
| ntc_amplify | For qPCR, did any no-template controls on this instrument run have a Ct value less than 40? For ddPCR, did any no-template controls on this instrument run have 3 or more positive droplets? | Yes | |
| rec_eff_percent | Percent of spiked recovery control, specified in 'rec_eff_target_name', that was recovered | Yes | |
| inhibition_detect | Was molecular inhibition detected? | Yes | |
| inhibition_adjust | Was inhibition incorporated into the PCR target concentration calculation? | Yes | If 'inhibition_detect' is "yes", then this must have a non-empty value |
| hum_frac_mic_conc | Concentration of microbial target specified in 'hum_frac_target_mic'; follow the same guidelines outlined for 'pcr_target_avg_conc' | No | If 'hum_frac_mic_unit' has a non-empty value, then this must have a non-empty value |
| hum_frac_mic_unit | Concentration units of microbial target specified in 'hum_frac_target_mic' | No | If 'hum_frac_mic_conc' has a non-empty value, then this must have a non-empty value |
| hum_frac_chem_conc | Concentration of chemical target specified in 'hum_frac_target_chem' | No | If 'hum_frac_chem_unit' has a non-empty value, then this must have a non-empty value |
| hum_frac_chem_unit | Concentration units of chemical target specified in 'hum_frac_target_chem' | No | If 'hum_frac_chem_conc' has a non-empty value, then this must have a non-empty value |
| other_norm_conc | Concentration of target spcified in 'other_norm_name' | No | If 'other_norm_unit' has a non-empty value, then this must have a non-empty value |
| other_norm_unit | Concentration units of target spcified in 'other_norm_name' | No | If 'other_norm_conc' has a non-empty value, then this must have a non-empty value |
| quality_flag | Does this observation have quality control issues? | No | |
| major_lab_method | A number used to distinguish major lab methods at the reporting jurisdiction level. Differences in lab methods may limit the comparability of PCR target concentrations. Reporting jurisdictions should use this field to indicate that lab methods are sufficiently different that caution should be used when comparing PCR target concentrations across them. These differences may result from any lab processing or quantification steps, including different PCR gene targets. Note that 'major_lab_method' may be the same for different laboratories if the reporting jurisdiction believes concentrations measured by those laboratories are comparable; conversely, 'major_lab_method' may be different for the same laboratory if changes made to the laboratory protocol rendered concentrations not comparable. | No | |
| major_lab_method_desc | Brief description of the basis for assigning a ‘major_lab_method’, e.g., "this lab uses a lab method distinct from other labs in this reporting jurisdiction", "this lab changed lab methods - new concentration method" or "lab method is same as other labs in this reporting jurisdiction but performance differs" | No |
| Field | Value Set Name | Value Set Name: | vs_concentration_method | vs_extraction_method | vs_hum_frac_target_chem | vs_hum_frac_target_mic | vs_institution_type | vs_mic_chem_units | vs_mic_chem_units_e | vs_num_no_target_control | vs_other_norm_name | vs_pcr_target | vs_pcr_gene_target | vs_pcr_type | vs_quant_stan_type | vs_rec_eff_spike_matrix | vs_rec_eff_target_name | vs_reporting_jurisdiction | vs_sample_location | vs_sample_matrix | vs_sample_type | vs_solids_separation | vs_wwtp_jurisdiction | vs_yn | vs_yne | vs_ynn | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Value Set | Description | Value Set | Description | Value Set | Description | Value Set | Description | Value Set | Description | Value Set | Description | Value Set | Description | Value Set | Description | Value Set | Description | Value Set | Description | Value Set | Description | Value Set | Description | Value Set | Description | Value Set | Description | Value Set | Description | Value Set | Description | Value Set | Description | Value Set | Description | Value Set | Description | Value Set | Description | Value Set | Description | Value Set | Description | Value Set | Description | Value Set | Description | |||||||||||||||||||||||||||||
| concentration_method | vs_concentration_method | membrane filtration with addition of mgcl2 | qiagen allprep powerviral dna/rna kit | caffeine | pepper mild mottle virus | not institution specific | This sample does not represent wastewater from a single institution, facility, or building | copies/L wastewater | copies/L wastewater | 0 | pepper mild mottle virus | sars-cov-2 | n1 | sars-cov-2 gene target | qpcr | Real-time PCR, also called 'quantitative' PCR | dna | raw sample | bcov vaccine | AL | Alabama | wwtp | A sampling location at a wastewater treatment plant or other community-scale treatment infrastructure specified in 'wwtp_name' | raw wastewater | Wastewater without any form of treatment applied to it | grab | An individual sample collected without compositing or adding other samples | filtration | Filtration to remove solids from a wastewater sample prior to further concentration or analysis of the liquid filtrate | AL | Alabama | yes | yes | yes | ||||||||||||||||||||||||||||||||||||||||||
| extraction_method | vs_extraction_method | membrane filtration with sample acidification | qiagen allprep powerfecal dna/rna kit | creatinine | crassphage | correctional | A prison, penitentiary, penal facility, jail, detention unit, or other facility in which persons are incarcerated by government officials | log10 copies/L wastewater | log10 copies/L wastewater | 1 | crassphage | delta | n2 | sars-cov-2 gene target | ddpcr | Used to refer specifically to BioRad digital droplet emulsification technology | rna | raw sample post pasteurization | bcov culture | AK | Alaska | upstream | A sampling location other than "wwtp" | post grit removal | Wastewater after removal of large solids at a treatment plant but prior to a primary clarifier | 48-hr flow-weighted composite | centrifugation | Centrifugation prior to or in the absence of a concentration step; centrifugation as part of a flocculation or precipitation process, or part of a filtration-based concentration process, is considered part of a concentration method; centrifugation to dewater sludge samples is considered a solids separation process, not a concentration process | AK | Alaska | no | no | no | |||||||||||||||||||||||||||||||||||||||||||
| hum_frac_target_chem | vs_hum_frac_target_chem | membrane filtration with acidification and mgcl2 | qiagen allprep dna/rna kit | sucralose | hf183 | long term care - nursing home | A residential healthcare facility that provides 24-medical care. These are also called skilled nursing facilities. Generally licensed by CMS. | copies/g wet sludge | Wet sludge mass is based on the mass of sludge without drying the solids in a drying oven | copies/g wet sludge | Wet sludge mass is based on the mass of sludge without drying the solids in a drying oven | 2 | hf183 | omicron | n3 | sars-cov-2 gene target | qiagen dpcr | clarified sample | brsv vaccine | AS | American Samoa | primary sludge | Sludge from the primary clarifier | 47-hr flow-weighted composite | gravity settling | Solids separated from liquid by allowing solids to settle by gravity | AS | American Samoa | [empty] | not tested | ||||||||||||||||||||||||||||||||||||||||||||||
| hum_frac_target_mic | vs_hum_frac_target_mic | membrane filtration with no amendment | qiagen rneasy powermicrobiome kit | ibuprofen | f+ rna coliphage | long term care - assisted living | A residential facility that provides assistance with daily care but generally does not provide skilled nursing care. May be licensed as healthcare facility based on state regulations. | log10 copies/g wet sludge | Wet sludge mass is based on the mass of sludge without drying the solids in a drying oven | log10 copies/g wet sludge | Wet sludge mass is based on the mass of sludge without drying the solids in a drying oven | 3 | f+ rna coliphage | e_sarbeco | sars-cov-2 gene target | fluidigm dpcr | sample concentrate | brsv culture | AZ | Arizona | primary effluent | Effluent from the primary clarifier | 46-hr flow-weighted composite | none | AZ | Arizona | ||||||||||||||||||||||||||||||||||||||||||||||||||
| institution_type | vs_institution_type | membrane filtration with addition of mgcl2, membrane recombined with separated solids | qiagen powerwater kit | [empty] | f+ dna coliphage | other long term care | Other residential facilities that provide daily and/or medical care, but are not defined as nursing home/skilled nursing facilities or assisted living facilities. An example of this is a state-licensed intermediate care facility. | copies/g dry sludge | Dry sludge mass is based on the mass of solids after drying in a drying oven | copies/g dry sludge | Dry sludge mass is based on the mass of solids after drying in a drying oven | more than 3 | f+ dna coliphage | n_sarbeco | sars-cov-2 gene target | life technologies dpcr | lysis buffer | murine coronavirus | AR | Arkansas | secondary sludge | Sludge from the secondary clarifier | 45-hr flow-weighted composite | [empty] | AR | Arkansas | ||||||||||||||||||||||||||||||||||||||||||||||||||
| sars_cov2_units | vs_mic_chem_units | membrane filtration with sample acidification, membrane recombined with separated solids | qiagen rneasy kit | [empty] | short stay acute care hospital | log10 copies/g dry sludge | Dry sludge mass is based on the mass of solids after drying in a drying oven | log10 copies/g dry sludge | Dry sludge mass is based on the mass of solids after drying in a drying oven | caffeine | rdrp_sarsr | sars-cov-2 gene target | raindance dpcr | dewatered solids | oc43 | CA | California | secondary effluent | Efluent from the secondary clarifier | 44-hr flow-weighted composite | CA | California | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| hum_frac_chem_unit | vs_mic_chem_units_e | membrane filtration with acidification and mgcl2, membrane recombined with separated solids | qiagen ez1 virus mini kit v2.0 | long term acute care hospital | Acute care hospitals that provide care for patients with average length of stay longer than 25 days. LTACH patients are often transferred from intensive care units of ACH. | micrograms/L wastewater | micrograms/L wastewater | creatinine | niid_2019-ncov_n | sars-cov-2 gene target | [empty] | phi6 | CI | Chicago, IL | septage | Wastewater sampled from within a septic tank | 43-hr flow-weighted composite | CO | Colorado | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| other_norm_units | vs_mic_chem_units_e | membrane filtration with no amendment, membrane recombined with separated solids | promega ht tna kit | child day care | log10 micrograms/L wastewater | log10 micrograms/L wastewater | sucralose | rdrp gene / ncov_ip2 | sars-cov-2 gene target | puro | CO | Colorado | holding tank | Wastewater sampled from a holding tank, such as from an airplane or ship | 42-hr flow-weighted composite | MP | Commonwealth of Northern Mariana Islands | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| hum_frac_mic_unit | vs_mic_chem_units_e | peg precipitation | promega automated tna kit | k12 | A school serving students in the kindergarten to 12th grade range | micrograms/g wet sludge | Wet sludge mass is based on the mass of sludge without drying the solids in a drying oven | micrograms/g wet sludge | Wet sludge mass is based on the mass of sludge without drying the solids in a drying oven | ibuprofen | rdrp gene / ncov_ip4 | sars-cov-2 gene target | ms2 coliphage | MP | Commonwealth of Northern Mariana Islands | 41-hr flow-weighted composite | CT | Connecticut | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| num_no_target_control | vs_num_no_target_control | aloh3 precipitation | promega manual tna kit | higher ed dorm | Solely higher education dormitory buildings | log10 micrograms/g wet sludge | Wet sludge mass is based on the mass of sludge without drying the solids in a drying oven | log10 micrograms/g wet sludge | Wet sludge mass is based on the mass of sludge without drying the solids in a drying oven | rnase p | taqpath n | sars-cov-2 gene target | hep g armored rna | CT | Connecticut | 40-hr flow-weighted composite | DE | Delaware | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| other_norm_name | vs_other_norm_name | ultracentrifugation | promega wastewater large volume tna capture kit | higher ed other | Higher education buildings or facilities that do not include dorms or that include dorms and other buildings | micrograms/g dry sludge | Dry sludge mass is based on the mass of solids after drying in a drying oven | micrograms/g dry sludge | Dry sludge mass is based on the mass of solids after drying in a drying oven | [empty] | taqpath s | sars-cov-2 gene target | heat inactivated sars-cov-2 virus | DE | Delaware | 39-hr flow-weighted composite | DC | District of Columbia | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| pcr_target | vs_pcr_target | skimmed milk flocculation | nuclisens automated magnetic bead extraction kit | social services shelter | Other type of social services shelter | log10 micrograms/g dry sludge | Dry sludge mass is based on the mass of solids after drying in a drying oven | log10 micrograms/g dry sludge | Dry sludge mass is based on the mass of solids after drying in a drying oven | orf1b | sars-cov-2 gene target | [empty] | DC | District of Columbia | 38-hr flow-weighted composite | FM | Federated States of Micronesia | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| pcr_gene_target | vs_pcr_gene_target | beef extract flocculation | nuclisens manual magnetic bead extraction kit | other residential building | Individual residential buildings or institutions not captured in other categories | [empty] | orf1ab | sars-cov-2 gene target | FM | Federated States of Micronesia | 37-hr flow-weighted composite | FL | Florida | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| pcr_type | vs_pcr_type | promega wastewater large volume tna capture kit | phenol chloroform | ship | n1 and n2 combined | sars-cov-2 gene target; Detection of N1 and N2 targets was performed on a single fluorescence channel, such that distinct measurements for N1 and N2 do not exist | FL | Florida | 36-hr flow-weighted composite | GA | Georgia | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| quant_stan_type | vs_quant_stan_type | centricon ultrafiltration | chemagic viral dna/rna 300 kit | airplane | n | sars-cov-2 gene target | GA | Georgia | 35-hr flow-weighted composite | GU | Guam | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| rec_eff_spike_matrix | vs_rec_eff_spike_matrix | amicon ultrafiltration | trizol, zymo mag beads w/ zymo clean and concentrator | other worksite | Any commercial facility not captured in other commercial facility categories | s | sars-cov-2 gene target | GU | Guam | 34-hr flow-weighted composite | HI | Hawaii | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| rec_eff_target_name | vs_rec_eff_target_name | hollow fiber dead end ultrafiltration | 4s method (https://www.protocols.io/view/v-4-direct-wastewater-rna-capture-and-purification-bpdfmi3n) | orf1a | sars-cov-2 gene target | HI | Hawaii | 33-hr flow-weighted composite | ID | Idaho | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| reporting_jurisdiction | vs_reporting_jurisdiction | innovaprep ultrafiltration | qiagen qiaamp buffers with epoch columns | ddcov_n | sars-cov-2 gene target | HO | Houston, TX | 32-hr flow-weighted composite | IL | Illinois | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| sample_location | vs_sample_location | no liquid concentration, liquid recombined with separated solids | zymo quick-rna fungal/bacterial miniprep #r2014 | ddcov_e | sars-cov-2 gene target | ID | Idaho | 31-hr flow-weighted composite | IN | Indiana | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| sample_matrix | vs_sample_matrix | ceres nanotrap | thermo magmax microbiome ultra nucleic acid isolation kit | ip2 and ip4 combined | sars-cov-2 gene target | IL | Illinois | 30-hr flow-weighted composite | IA | Iowa | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| sample_type | vs_sample_type | zymo environ water rna kit/ zymo environ water rna kit (cat. r2042) | zymo environ water rna kit/ zymo environ water rna kit (cat. r2042) | a1306s | delta gene target | IN | Indiana | 29-hr flow-weighted composite | KS | Kansas | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| solids_separation | vs_solids_separation | none | p2046l | delta gene target | IA | Iowa | 28-hr flow-weighted composite | KY | Kentucky | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| wwtp_jurisdiction | vs_wwtp_jurisdiction | p2287s | delta gene target | KS | Kansas | 27-hr flow-weighted composite | LA | Louisiana | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| sars_cov2_below_lod | vs_yn | t3646a | delta gene target | KY | Kentucky | 26-hr flow-weighted composite | ME | Maine | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| ntc_amplify | vs_yn | v2930l | delta gene target | LC | Los Angeles County, CA | 25-hr flow-weighted composite | MD | Maryland | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| stormwater_input | vs_yne | g662s | delta gene target | LA | Louisiana | 24-hr flow-weighted composite | MA | Massachusetts | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| influent_equilibrated | vs_yne | p100l | delta gene target | ME | Maine | 23-hr flow-weighted composite | MI | Michigan | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| pretreatment | vs_yne | a1918v | delta gene target | MD | Maryland | 22-hr flow-weighted composite | MN | Minnesota | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| ext_blank | vs_yne | t19r | delta gene target | MA | Massachusetts | 21-hr flow-weighted composite | MS | Mississippi | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| pasteurized | vs_yne | e156g | delta gene target | MI | Michigan | 20-hr flow-weighted composite | MO | Missouri | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| inhibition_adjust | vs_yne | del 157/158 | delta gene target | MN | Minnesota | 19-hr flow-weighted composite | MT | Montana | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| quality_flag | vs_yne | l452r | delta gene target | MS | Mississippi | 18-hr flow-weighted composite | NE | Nebraska | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| inhibition_detect | vs_ynn | p681r | delta gene target | MO | Missouri | 17-hr flow-weighted composite | NV | Nevada | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| d950n | delta gene target | MT | Montana | 16-hr flow-weighted composite | NH | New Hampshire | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| i82t | delta gene target | NE | Nebraska | 15-hr flow-weighted composite | NJ | New Jersey | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| d63g | delta gene target | NV | Nevada | 14-hr flow-weighted composite | NM | New Mexico | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| r203m | delta gene target | NH | New Hampshire | 13-hr flow-weighted composite | NY | New York | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| g215c | delta gene target | NJ | New Jersey | 12-hr flow-weighted composite | NC | North Carolina | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| d377y | delta gene target | NM | New Mexico | 11-hr flow-weighted composite | ND | North Dakota | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| k856r | omicron gene target | NY | New York | 10-hr flow-weighted composite | OH | Ohio | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| s2083i | omicron gene target | NZ | New York City, NY | 9-hr flow-weighted composite | OK | Oklahoma | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| del2084/2084 | omicron gene target | NC | North Carolina | 8-hr flow-weighted composite | OR | Oregon | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| a2710t | omicron gene target | ND | North Dakota | 7-hr flow-weighted composite | PA | Pennsylvania | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| p3395h | omicron gene target | OH | Ohio | 6-hr flow-weighted composite | PR | Puerto Rico | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| del3674/3676 | omicron gene target | OK | Oklahoma | 5-hr flow-weighted composite | MH | Republic of the Marshall Islands | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| i3758v | omicron gene target | OR | Oregon | 4-hr flow-weighted composite | PW | Republic of Palau | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| i1566v | omicron gene target | PA | Pennsylvania | 3-hr flow-weighted composite | RI | Rhode Island | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| a67v | omicron gene target | PH | Philadelphia, PA | 2-hr flow-weighted composite | SC | South Carolina | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| del69/70 | omicron gene target | PR | Puerto Rico | 1-hr flow-weighted composite | SD | South Dakota | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| del143/145 | omicron gene target | MH | Republic of the Marshall Islands | 48-hr time-weighted composite | TN | Tennessee | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| n211i | omicron gene target | PW | Republic of Palau | 47-hr time-weighted composite | TX | Texas | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| del212/212 | omicron gene target | RI | Rhode Island | 46-hr time-weighted composite | VI | U.S. Virgin Islands | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| g339d | omicron gene target | SC | South Carolina | 45-hr time-weighted composite | UT | Utah | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| s371l | omicron gene target | SD | South Dakota | 44-hr time-weighted composite | VT | Vermont | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| s373p | omicron gene target | TN | Tennessee | 43-hr time-weighted composite | VA | Virginia | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| s375f | omicron gene target | TX | Texas | 42-hr time-weighted composite | WA | Washington | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| s477n | omicron gene target | VI | U.S. Virgin Islands | 41-hr time-weighted composite | WV | West Virginia | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| e484a | omicron gene target | UT | Utah | 40-hr time-weighted composite | WI | Wisconsin | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| q493r | omicron gene target | VT | Vermont | 39-hr time-weighted composite | WY | Wyoming | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| g496s | omicron gene target | VA | Virginia | 38-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| q498r | omicron gene target | WA | Washington | 37-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| y505h | omicron gene target | WV | West Virginia | 36-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| t547k | omicron gene target | WI | Wisconsin | 35-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| n679k | omicron gene target | WY | Wyoming | 34-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| d796y | omicron gene target | 33-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| n856k | omicron gene target | 32-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| q954h | omicron gene target | 31-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| n969k | omicron gene target | 30-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| l981f | omicron gene target | 29-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| t9i | omicron gene target | 28-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| d3g | omicron gene target | 27-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| q19e | omicron gene target | 26-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| a63t | omicron gene target | 25-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 24-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 23-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 22-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 21-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 20-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 19-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 18-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 17-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 16-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 15-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 14-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 13-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 12-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 11-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 10-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 9-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 8-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 7-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 6-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 5-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 4-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 3-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 2-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 1-hr time-weighted composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 48-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 47-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 46-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 45-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 44-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 43-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 42-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 41-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 40-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 39-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 38-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 37-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 36-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 35-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 34-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 33-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 32-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 31-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 30-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 29-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 28-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 27-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 26-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 25-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 24-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 23-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 22-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 21-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 20-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 19-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 18-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 17-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 16-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 15-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 14-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 13-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 12-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 11-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 10-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 9-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 8-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 7-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 6-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 5-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 4-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 3-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 2-hr manual composite | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 1-hr manual composite |
| File Type | application/vnd.openxmlformats-officedocument.spreadsheetml.sheet |
| File Modified | 0000-00-00 |
| File Created | 0000-00-00 |