NVSL 201 SARS CoV-2 Testing Data from Laboratories

SARS-CoV-2 Testing in Animals Reporting Activities

NVSL 201, SARS CoV-2 Testing Data fr Labs.xlsx

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OMB: 0579-0476

Document [xlsx]
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Overview

SARS COVID2 Testing Data
List of Values


Sheet 1: SARS COVID2 Testing Data

NVSL-201, SARS COVID-2 Testing Data from Testing Laboratories




































Instructions (please refer to current reporting guidance for reporting timeline and contact specifics):





According to the Paperwork Reduction Act of 1995, no persons are required to respond to a collection of information unless it displays a valid OMB control number. The valid OMB control number for this information collection is 0579-XXXX. The time required to complete this information collection is estimated to average 0.25 hours per response, including the time to review instructions, search exiting data resources, gather the data needed, and complete and review the information collected. OMB Approved 0579-XXXX EXP: XX/XXXX









> Please only provide NEW testing data. Do not append previously reported results















> Premises information is for the COLLECTION SITE where animal was located at the time the sample was collected















> Use 2 letter abbreviation when entering the state















> Clinical signs - if more than one clincal sign is entered, separate each with a comma















>Specimen Other - Enter data only if the specimen type tested is not available in the dropdown in column H "Specimen"






















>Species Other - Enter data only if the species type tested is not available in the dropdown in column D "Species"






















Requested information in green highlighted columns. All other columns are optional.





Date Format




















MM/DD/YYYY









Testing Lab Name Test Purpose/Program OID Label Lab Accession number Species Species Other BARCODE or Specimen ID Animal ID SPECIMEN SPECIMEN Other SUBMISSION REASON Clinical Signs DATE COLLECTED Date Specimen Received DATE TESTED Test Type PCR CT Value TEST RESULT INTERPRETATION PREMISES STATE Submitter Last Name Submitter First Name Submitter Phone Owner State
(optional)
Owner Name
(optional)
Comments

Sheet 2: List of Values

Lists of Values for selected fields on the Template Spreadsheet







Description - Short Name LOINC Code Long name
Test Type SARS-CoV-2 N gene 94510-5 SARS coronavirus 2 N gene [Cycle Threshold #] in Unspecified specimen by NAA with probe detection

SARS coronavirus 2 S gene 94643-4 SARS coronavirus 2 S gene [Cycle Threshold #] in Unspecified specimen by NAA with probe detection

SARS coronavirus 2 N gene (N1) 94311-8 SARS coronavirus 2 N gene [Cycle Threshold #] in Unspecified specimen by Nucleic acid amplification using CDC primer-probe set N1

SARS coronavirus 2 N gene (N2) 94312-6 SARS coronavirus 2 N gene [Cycle Threshold #] in Unspecified specimen by Nucleic acid amplification using CDC primer-probe set N2







PCR interpretation Description Local Code

Detected DET

Not Detected NDET

Indeterminate IND




Specimen Type Description SNOMED Code

Oral swab (specimen) 418932006

Nasal Swab 421000009108

Rectal swab (specimen) 258528007

Fecal swab (specimen) 32281000009109

Oropharyngeal swab (specimen) 661000009100

Nasopharyngeal swab (specimen) 258500001

Serum specimen (specimen) 119364003
















Specimen Other Specimen of unknown material (specimen) 119324002

If specimen type is not included in list above enter here













Clinical Signs Examples


Coughing, Fever, Lethargy


Anorexia, Depression

Recumbency





lab names list of values






































































































































































































Surveillance Stream COVID-19 Companion 2.16.840.1.113883.3.5.8.18.2.1

COVID-19 Zoo/Wildlife/non-human primates 2.16.840.1.113883.3.5.8.18.2.2

COVID-19 Livestock and Poultry 2.16.840.1.113883.3.5.8.18.2.3








Submission Reason G General Diagnostics

H Health Monitoring

P Public Health Investigation








Species Text label SNOMED Code Common name

Canis lupus subspecies familiaris (organism) 448771007 Canine – Dog

Felis catus (organism) 448169003 Feline - Cat

Mustela putorius subspecies furo (organism) 449310008 Ferret

Sus scrofa 78678003 Porcine – Pig

Bos Taurus 34618005 Bovine – Cow
File Typeapplication/vnd.openxmlformats-officedocument.spreadsheetml.sheet
File Modified0000-00-00
File Created0000-00-00

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